First I would hook the scope probe to the 1KHz calibration output to make sure the scope can display a clean 1KHz square wave. You had said the scope may be water damaged, I'd check the scope's function first before investing too much money in it. You can also look at the 25.175MHz oscillator output with the scope.
Bill
I hooked it up to the oscillator and got a sine wave. It was not square. Again, could be a lot of things going on there. I get square waves from EEPROM and further counters and stuff. The slower the signal, the more square it is. The faster it is (as in 25.175 MHz, or any of the signals from the first counter), it looks less like a square wave, more like a sine wave.
Well, I did get some money for Christmas, so I guess $30 probes with free shipping isn't too bad. Dying to have an EEPROM programmer though, ugh. Programming that 28C256 yesterday took about 30 minutes using the Raspberry Pi and my little breadboard circuit.
Chad