After gerberizing my PCB layouts, I check the result on the gerber viewer to make sure no unwanted effects like that sneak in. The power and ground planes are the most likely to need fixing. I use gerbv which is a free gerber viewer for Linux and it downloaded and installed in a jiffy from the Ubuntu software center.
Edit, 12/1/16: I see there's a free 3D online gerber viewer at
http://mayhewlabs.com/3dpcb .
I make all my own PCB components in the CAD, primarily to get greater density. I don't use the supplied libraries. Much greater density can also be achieved by a good human router than by an autorouter too, so I don't use autorouters. I have not seen any schematic capture that I like (although I got very proficient with OrCAD at my last place of work), so I've been doing my schematics by hand.