Very good article indeed.
In the address decoding page, you could probably add a timing diagram with phi2, address lines and
how the setup times etc add up (what you now explain in words).
Is it not normally the capital Phi letter? You're using the lower case phi letter, which looks
strange to me. In fact in your diagram it indeed is the capital phi.
anecdotal evidence: that the VIA needs CS before Phi2 is the reason it does not work out of the
box on the C64, where the address bus is shared with the video chip (using phi1). So you had to
delay the rising edge of phi2 a bit.
On the memory map page you start using 6502 opcodes, but knowing them is not a prerequisite.
Ok, maybe be implicit because why build a 6502 computer without knowing it...
Maybe a kind of side box explaining say that :'"STA" means "STore Accumulator", storing the
general purpose accumulator register to a memory address given by the addressing mode', or
what "LDX" and "TSX" mean. Would introduce some of the basics in a simple way, for those
that just "walk by"
On 74xx timing, for example a Philipps 74ALS138 has 22ns max prop. delay - twice as fast as 'LS.
On the mistery pins: the /SO pin was used in the commodore floppies (VC1541 and relatives, not
the older PET drives though) to check if a byte was ready to be read from the input shift registers,
resp. when it was ready to put another byte on the output shift register. Here is an excerpt from
the VC1541 ROM. Note the BVC at $F4D4
; read sector
F4D1 20 0A F5 JSR $F50A
F4D4 50 FE BVC $F4D4
F4D6 B8 CLV
F4D7 AD 01 1C LDA $1C01
F4DA 91 30 STA ($30),Y
F4DC C8 INY
F4DD D0 F5 BNE $F4D4
On the wirewrap page you may want to (and are hereby allowed to

show the picture I
give on this page:
http://www.6502.org/users/andre/csa/vdc/index.html with a comparison
of the very first version of my video card (as not to do it) and how it compares to
today's custom-made board. It DID work though!
In the I/O ICs you could mention that it's pretty easy to even add intel-like I/O ICs like
the 16550 UART by creating /RD and /WR from Phi2 and R/-W. Also Intel-compatible Ethernet
chips have been connected directly to the 6502 bus, as well as USB ICs, for example here
http://www.6502.org/users/andre/csa/usb/index.html (shameless self-plug

And maybe a warning that the 6551 control lines are internally connected with internal state, which you might
not want, so better look at the datasheet.
For the displays, even if you would not recommend it anymore, you could mention that even the
first PCs used 6845 (compatible with 6545) based video cards and those were used in the PET
(and the Apple??) for example.
Great read! Thanks for sharing!