I was always told by the Technicians at university (who have like, 60 years experience between them) that you want to put the caps as close to GND as possible in order to reduce ground bounce, but I know that Garth has a differing opinion on the matter.
Honestly, I think if you have (good) power planes it honestly doesn't make much difference, since the impedance is already so low.
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Want to design a PCB for your project? I strongly recommend
KiCad. Its free, its multiplatform, and its easy to learn!
Also, I maintain KiCad libraries of
Retro Computing and
Arduino components you might find useful.