OK, all is well
I first removed the jumpers I felt I needed to remove (C-2, G-6, D-3, H-6) and tested to see if the monitor and Basic worked (they do). Then added jumpers (C-1, G-2, L-46,47, D-1, H-3, and M-15,16), popped in the TI 2532JL-30 programmed EPROMs, typed G B000, and got the RAE prompt. I tested it out a bit and it works - so make a few changes to the RAE section 10.0 directions and you should be fine :
.G B000
RAE V1.0
COPYRIGHT 1979 SYNERTEK SYSTEMS CORP.
0200-0BFC 0C00-0EFC 0F00
0200 0C00
>10 LDX #0
>20 TXA
>30 LOOP STA $300,X
>40 DEX
>50 BNE LOOP
>PRINT
0010 LDX #0
0020 TXA
0030 LOOP STA $300,X
0040 DEX
0050 BNE LOOP
//
>30LOOP STA $300,X
>PRINT
0010 LDX #0
0020 TXA
0030 LOOP STA $300,X
0040 DEX
0050 BNE LOOP
//
>PRINT 20 40
0020 TXA
0030 LOOP STA $300,X
0040 DEX
//
>ASSEMBLE LIST
0050 BNE LOOP
!07 AT LINE 0050/80
>60 .EN
>ASSEMBLE LIST
0200- A2 00 0010 LDX #0
0202- 8A 0020 TXA
0203- 9D 00 03 0030 LOOP STA $300,X
0206- CA 0040 DEX
0207- D0 FA 0050 BNE LOOP
0060 .EN
LABEL FILE: [ / = EXTERNAL ]
LOOP=0203
//0000,0209,0209